Ask.Cyberinfrastructure

Q&A


About the Q&A category (1)
How can I run Jupyter Notebooks on my institution's HPC cluster? (6)
Is there a way to process archived files without fully extracting them to disk? (7)
My R loop slows down when I increase the number of iterations on an HPC (2)
How can I compile my cuda code so I could call it from my R script (2)
Customize modulefile based on the node properties (3)
How can I use passwordless ssh in an HPC environment? (4)
Poor interaction with MATLAB running on remote server (3)
How do I run Apache Spark in an HPC environment? (2)
How can one determine the amount of RAM a node has in an HPC environment? (5)
PacBIO SmrtAnalysis (6)
Using GPFS and CephFS together (1)
How do I estimate if the hard time limit will be exceeded before submitting a job? (2)
Using LMOD to load Python libraries from a user's home directory (4)
How do I redirect stdout/stderr in my SLURM job scripts? (2)
Is there an appreciable difference between a single thread waiting for work and multiple threads that are created and destroyed on demand? (2)
What is a Science DMZ? (2)
How do I search for which modules are available on an HPC? (6)
How do I use DMTCP to create a checkpoint and restart my program? (2)
How to reduce memory footprint without restructuring mpi code (3)
Running multiple LAMMPS jobs on a node (2)
Tensorflow script to run on single core (3)
Can latest version of Tensorflow be built to work on nodes with GPUs and nodes without them? (1)
What are some ways to organize the modules created to manage multiple versions and combinations of compilers, tools, drivers and libraries on a shared cluster? (3)
With MPI jobs using an Isilon Storage system for scratch, are there I/o issues that can be avoided? (3)
How do I check that all mount points are in place, and mark a node out of service if a mount point is missing before a job is scheduled in Slurm? (3)
How can I determine how much memory I need before submitting my GAMESS calculation? (2)
In a PBS Pro select statement, what's the difference between procs and mpiprocs? (2)
How to determine if jobs are dying on their own or from the scheduler? (2)
How do I get the list of features and resources of each node in Slurm? (3)