Ask.Cyberinfrastructure

Using RAM Disk on the queuing system to optimize file I/O [Discussion Zone] (6)
Is it possible (and advisable) to run Turbomole without ssh enabled? [Q&A] (5)
Running multiple LAMMPS jobs on a node [Q&A] (2)
What kind of hardware works best for the Amber Molecular Dynamics Package? [Q&A] (4)
PacBIO SmrtAnalysis [Q&A] (6)
Poor interaction with MATLAB running on remote server [Q&A] (3)
How can I see the names of the nodes my multi-node MPI job is using on our SGE cluster? [Q&A] (3)
HPC job managers and migrating to the cloud [Discussion Zone] (5)
Cost of running hpc nodes [Discussion Zone] (2)
SLURM: how can I get more details about why a job still pending execution? [Q&A] (4)
Starting a virtual machine image without knowing the user name or password [Q&A] (3)
Using GPFS and CephFS together [Q&A] (1)
Optimizing very large neural network that is greater than size of GPU memory [Discussion Zone] (2)
What configurations best support sensitive data in a shared cluster environment? [Discussion Zone] (3)
My R loop slows down when I increase the number of iterations on an HPC [Q&A] (2)
How to prepare projects in R for archiving? [Q&A] (3)
What is the most efficient Python package to run a parallel job over multiple nodes? [Q&A] (4)
What is a Science DMZ? [Q&A] (2)
Economics of JupyterHub at Scale? [Discussion Zone] (3)
HPC Training Resources [Discussion Zone] (2)
Is there an appreciable difference between a single thread waiting for work and multiple threads that are created and destroyed on demand? [Q&A] (2)
How can one determine the amount of RAM a node has in an HPC environment? [Q&A] (5)
Cgroups with MPI process affinity [Q&A] (2)
How do you add your institutional HPC cluster to the Open Science Grid (OSG)? [Q&A] (2)
What are good ways to allow the use of software containers in a shared HPC cluster? [Q&A] (3)
How do I estimate if the hard time limit will be exceeded before submitting a job? [Q&A] (2)
What are good tools for determining where a program is spending the most wallclock time? [Q&A] (4)
Does GAMESS benefit from running calculations on multiple compute nodes? If so, what methods scale the best across many compute nodes on a cluster? [Q&A] (3)
Why was Rocks software named "Rocks"? [Q&A] (3)
What is the best place and/or mechanism to load modules to run a calculation? [Q&A] (2)