Introducing myself - Yile Wang

Cyberteams TRECIS
8

Hey Yile,

gfortran is part of the default compiler stack for Europa.

[csim@europa ~]$ ml list

Currently Loaded Modules:
  1) autotools   2) prun/2.0   3) gnu9/9.3.0   4) ucx/1.8.0   5) libfabric/1.10.1   6) openmpi4/4.0.4   7) ohpc

 

[csim@europa ~]$ which gfortran
/opt/ohpc/pub/compiler/gcc/9.3.0/bin/gfortran

git is also available

[csim@europa ~]$ which git
/usr/bin/git
[csim@europa ~]$ git --version
git version 2.18.4

Miniconda is available as a module

[csim@europa ~]$ ml load miniconda
[csim@europa ~]$ which conda
/opt/ohpc/pub/unpackaged/apps/miniconda/4.8.3/bin/conda

As is FSL

[csim@europa ~]$ ml show fsl
----------------------------------------------------------------------------------------------------------------------------------------------------
   /opt/ohpc/pub/unpackaged/modulefiles/fsl/6.0.4:
----------------------------------------------------------------------------------------------------------------------------------------------------
whatis("Name: FSL ")
whatis("Version: 6.0 ")
whatis("Category: runtime ")
whatis("Description: analysis and visualization tool for MRI data  ")
whatis("URL https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ ")
depends_on("openblas")
setenv("FSLDIR","/opt/ohpc/pub/unpackaged/apps/fslbinary/6.0.4")
setenv("FSLOUTPUTTYPE","NIFTI_GZ")
setenv("FSLMULTIFILEQUIT","TRUE")
setenv("FSLTCLSH","/opt/ohpc/pub/unpackaged/apps/fslbinary/6.0.4/bin/fsltclsh")
setenv("FSLWISH","/opt/ohpc/pub/unpackaged/apps/fslbinary/6.0.4/bin/fslwish")
setenv("FSLLOCKDIR","")
setenv("FSLMACHINELIST","")
setenv("FSLREMOTECALL","")
prepend_path("PATH","/opt/ohpc/pub/unpackaged/apps/fslbinary/6.0.4/bin")
prepend_path("LD_LIBRARY_PATH","/opt/ohpc/pub/unpackaged/apps/fslbinary/6.0.4/lib")
help([[Sets up your environment for FSL.

]])

For AFNI and Freesurfer, we will get to those in the next week or so.

Happy computing!

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